Line Art Drawing of a Fish

Population Simulator
(POPSIM)

 

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About

Version 7.5 (May 2012)

Research Model

 

The Population Simulator (POPSIM) is a general data simulator designed to allow users to create populations with known underlying parameters and error structure. The program can be used to reveal the limitations of alternative estimation methods. These considerations are particularly important where model misspecification can lead to widely varying results. This simulator should have general utility for examining tradeoffs among model dimensionality, degree of fit and generality.

 

The user specifies the coefficients of a von Bertalanffy growth equation.  This is applied in creating the initial population as normally distributed based on user specified proportion at age. The growth equation is also used in creating growth projection matrices for each age class.

 

Maturity and fishery selectivity are specified as length based functions.  The user specifies the fully recruited fishing mortality and natural mortality in each year of the model.  The population is developed as length by age matrix for each year as a forward projecting model.  Mortality is applied and then growth projection.  The user may specify recruitment either as a vector of annual recruitment or using either Beverton-Holt or Ricker stock recruitment functions.

 

The user may specify “surveys” of abundance based on applying log-normal error to the “true” populations in each year.  The program will use the survey data as needed to create indices for use in testing estimation models.

 

Catch samples are developed by sampling by user defined market categories from the “true” Catch data.  The user can specify length-weight equation coefficients for the true Catch as different from the Samples.  The user also specifies the sampling rate by market categories and error levels used in creating simulated landings by market.  Age-length keys can have user defined ageing imprecision applied.

 

The resulting stochastic realizations can be used to automatically generate datasets for input to VPA/ADAPT, CSA, ASPIC, ASAP, SS2, SCALE and AIM. Because the “surveys” with error are independent of how they are applied as indices of abundance in the estimation model, the same random error is being applied on each realization independent of the model being evaluated.  Thus, multiple models can be compared in their relative ability to recover the “true state of nature”

 

POPSIM can be used to verify that the estimation models can recover the true parameters and the limitations of various models when their underlying assumptions are violated. The simulator is designed to allow users to rapidly compare the relative merits of alternative modeling approaches. The Visual Basic user interface allows for complete graphical analysis of input and output data.

 

POPSIM can now launch multiple realizations of these models with user-defined variability and compare how well the estimator models recover the "true state of nature" as defined by the original POPSIM forward projection.

 

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Version History

 

PopSim Version 7.0.0 (October, 2010)


PopSim Version 6.1.2 (May, 2010)


PopSim Version 5.4 (October, 2009)

           Natural Mortality

           Growth Equation

           Length Weight Equation
           Maturity

          VPA/ADAPT                           (Version 3.0)

          CSA                                       (Version 3.1)

          ASPIC                                    (Version 5.34)

          ASAP                                     (Version 2.0)

          Stock Synthesis 3                   (Version 3.03a)

          SCALE                                   (Version 1.0)

          AIM                                        (Version 2.1)

          STATCAM                              (Version 1.4)

 

PopSim Version 4.8 (February 2008)

 

PopSim Version 4.7 (February 2008)

 

PopSim Version 4.6 (February 2008)

 

PopSim Version 4.5 (January 2008)

 

PopSim Version 4.0 (October 2007)

 

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Older Version Changes 

 

PopSim Version 3.5.2 (April 2006) 

 

PopSim Version 3.5.1 (February 2006)

  

PopSim Version 3.5 (December 2005)

 

PopSim Version 3.1 (April 2005)

 
PopSim Version 3.0
Allows a more comprehensive specification of input to VPA/ADAPT, ASPIC, ASAP, and CSA. Can now launch multiple realizations of these models with user defined variability and compare how well the estimator models recover the "true state of nature" as defined by the original POPSIM forward projection.
 
Changes to the input data include:

  
Added functionality to the graphic interface include:

  

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NOAA Fisheries Toolbox Version 3.1

website last modified May 16, 2016